Hello faqmar, if you are designing around 48v dc battery charging, and your blade length is 1.8m (diameter 3.6m) and you are carving wooden blades similar to Hugh Piggott design or Otherpower design, you will then want to cut in around roughly 125RPM. This means that at 125RPM you need to have at least your battery voltage after the rectifier. This means, for example if you are generating 50vdc, your turbine rotor will need to be spinning 125RPM, so that would be .4vdc/RPM. You claim that you are seeing .1vdc/RPM, so it appears that your alternator is wound with too few turns (more along the lines of a 12v turbine).
If you are in a pinch and NEED to get your testing done, I would re-wire the batteries in parallel, at which case you could possibly properly load the rotor at realistic RPM. Not sure what ampacity of wire you used in your stator, so beware of getting it too hot, as it will need to pass 80A to get the proper 1000w loading you require.
Hope this makes sense.
RoyR