Here's what I've noticed when working with fresnel lenses:
First of all, they are somewhat of a fire hazard for using with anything, so be careful.
Second, for it to really work, you will need to have your pipes at about half way between the lenses and the focal point. This WILL make the area hotter obviously, but heres the thing. If the lens is not Exactly aligned with the angled of the sun, the light may divert at an angle and miss what you are trying to heat, and then also completely shade the area you DO want to heat.
The only way I see a fresnel lense working there would be if you had a tracking system. But I'd just stick with dual pane glass for the glazing. I think a 2 by 2 foot area with glass with heat water more than just a single fresnel lense concentrated on a single point.