I do not normally use a fuse on the controller circuit itself, though I probably should.
It would take some very catastrophic failures to get 25ma through the circuit. Even a short on the output wire (to fet gates) will only pull about 110ma, and should not damage the circuit (usually).
I believe the biggest danger is the wires being shorted from damage, or operator error.
A fuse should be very near the battery.
A half or 1A fuse should not cause problems. Not sure a 250ma would cause problems.
It should be fast blow.
Bigger is better for cable.
"so it had as little impact as possible on the voltage the controller sees"
Correct. But after a certain point the difference is minute.
And that wire passed that point!
If you used #22 like I use, I would say you should run a 2nd cable.
If you used #22 like I use, it would be far more susceptible to damage.
The large wire will not cause any problems.
A cheapie fuse holder may cause problems.
Get one with solid clips on each end. Not one of those white plastic tubes that come with cheap car stereos.
A poor connection between the fuse and fuse holder could wreak havoc on the controller's voltage being sensed, and that kind of issue is Very difficult to find.
Might consider gold plated holders and fuses, if they are made in that size.
G-