ok, I suspect two things are broken, the diodes in the one panel are toast, that much is clear and I think the charge controller is messed up, or broken.
It would help if you posted a schematic of what you're trying to do here, but from what I can see this is the way it should have been connected:
+ of all panels together to inline fuse of about 20A (24 V panels, about 4A each, 5 of them) or a 5 A inline fuse for each panel, output of fuse(s) to + input of a DC rated breaker, load side of breaker to '+' input on charge controller. - of all panels together to - block of charge controller.
- output of charge controller to DC disconnect load side
- input of inverter to DC disconnect load side
- of battery to DC discconect input side
If you're using a shunt:
'-' block of charge controller to high side of shunt (if any)
'-' battery - to low side of shunt
'-' inverter wire to low side of shunt
If you're not using a shunt:
'-' block of charge controller, battery - and inverter - bonded together
Before blowing up another charge controller I suggest you make a drawing of the above circuit (I don't have any drawing package handy, sorry) to make sure you understand it thoroughly. If you're extremely lucky all you're down right now is a bunch of diodes (they could be shorted internally), test with only one panel to make sure you get it right and include that inline fuse (that would have saved you this time around if you had installed it in the first place).
When switching this on VERIFY ALL VOLTAGES before engaging breakers the first time.
The correct way to switch them on is FIRST the main breaker, wait for the inverter to come up, then the solar breaker. The reason for this is that the battery voltage is stable, but the solar voltage is not and if you don't draw them down with the battery they could be way high. The disadvantage of this way of hooking things up is that if the main breaker goes you have an 'undefined' situation on your hands, but the alternative (hooking the solar controller directly in to the battery) would give you serious trouble in the case of a malfunction of the controller.
A good - but expensive - alternative would be to use two DC disconnects for the solar, one before the controller to protect the array, and one after it to protect the wiring from the batteries. That however is not to code...