Anne-Claire,
Use NONE of the diodes that came with the panels.
Each panel is really a 12V module. Each 6V PV is in series with another 6V PV, to make a 12V module.
A bypass diode is across each 6V PV.
In a 12V system they are not needed and could cause problems. I would suggest simply cutting them completely out.
It is that simple.
The main power points in the module will be about 20V open circuit.
Ignore the rest of the connections, except to make sure they are tight.
I know that makes no sense,
so cut out ALL the diodes,
and use the connections that make ~20V open circuit.
Place those +20V leads to the charge controller, in parallel.
Cut out the diodes, find the ~20V terminals, use them.
G-