If it's going to be truely remote and your not going to visit it for weeks on end.
I would consider putting two relays on each batterys positive terminal. they would need to handle the amps going in and out. put a volt monitor across each battery that can also be switched on/off. or use a single volt meter that can be switched to any single battery at a time.
the two relays at each battery are for:
relay A.) for charging battery
relay B.) for using the battery to supply power.
there's also a manual shutoff switch. diodes, fuses, etc.
it's quite a bit overengineered probably, but I plan on using this as a guide to doing my battery bank. especially since I want to monitor and control what's going on from a panel (scrouged out of dumpster, along with a couple hundred feet of 12v alarm control wire)
where in your case you probably would like to monitor and control all this from some type of pc/whatever computer your using to log all the other stuff your doing there.