Need a few more details... like what is the original output of the generator, does it use or need a half-wave or a full-wave bridge before the voltage doubler, what is the design of the doubler, etc...
I'd be willing to bet that if you are using a voltage doubler, then your original output is DC, and that you are using a half-wave bridge (simple diode) to keep the battery from backfeeding to the gen, and that diode is between the gen and the doubler. I would be willing to bet that you probably don't need another one after the doubler.