Are you running ac to the shop and rectifying near the batteries?
If so. the easiest way to brake the machine is to short the alternator output before the rectifiier with a suitably rated double pole switch
(I don't know the details of this machine, I assume it's 3-phase).
350W/24V is about 15A, a 20+ Amp ac rated switch should do the job nicely.
Controllers, well it depends on how much you're prepared to babysit the system, budget, battery size/ chemistry etc.
A "solar" controller won't cut it, you need something that will divert power to some sort of dump load. We need more info on your proposed system please.
Running a 12V inverter on a 24V system is pretty much a no-no unless you're prepared to do even more babysitting/ balancing both halves of the battery bank.
Paul.
(off-grid 8 years).