I have 2 MPPT's hooked up to the same bank. They each have their own panels. The only catch may be that my MPPT's bridge the panel ground and battery ground. That means the 2 controllers share a common ground. If the controllers use PWM then the pulses from each unit can ring back into each other.
That hasn't been an problem for me.
The other issue is where you set the float voltage on each unit. If you don't set them very close to each other, one will quit before the other and the other will be doing most of the final charging. If one was a 2 stage and the other 3 stage, then the 2 stage should be set to cut off just a little before the 3 stage unit.