You say the stator turned out twice as thick as you intended, that is fairly normal if you calculated the thing from wire dimensions. Obtaining 50% stacking factor is reasonably normal.
You have only used about half the winding area for the bits that you have wound so you will probably have more resistance than the conventional way. It takes a lot of skill and effort to beat the other method on a radial.
You seem to have used an 18 coil winding, this bit about 3 coils with 12 legs is beyond me. Also the bit about active and inactive copper is a bit of a red herring.
Anyway what you have should work ok and if you can really refine your winding technique you will get it better. The final crunch is what happens on test, your method is fine but to me it seems hard work with little to be gained in performance over the simple 9 coil scheme.
You don't mention the magnets, if they are the wedge shape ones you will have the best results, if rectangular you would probably do better with 9 coil single layer.
Flux