Bill,
Well done on doing a passive solar project. I would like to see a lot more of that here.
I just wanted to give you a heads up though. I think I've detected a construction problem you will need to think about. I'm concerned about how you are going to finish the south side of the roof. The skylights are too close together to get the flashing in between them. You will probably have to do a lot of tin snipping to work the flashing kit in there, and that could cause some leaks.
Also, I think you are going to need to pull the skylights and put firring strips underneath them to raise them up to the proper height above the rafters. The reason is that when you put your OSB or plywood on the remainder of the roof, the flashing kits won't fit on the skylights correctly because of the difference in height between the area where the skylights are and the rest of that side of the roof. Skylights will leak if given even half a chance.
Just thought I would give you a heads up on that so you can look it over and start thinking of remedies if necessary.
best,
jp