As has been pointed out it could be a tracking problem.
The blades need to track within about 5mm of each other.
To check this and to rectify any miss-alignment you would need to lower the mill and do some tracking alignment checks on the blades- this is not difficult .
It basically involves spinning the blades by hand and checking for any blade runout and adjusting for this runout.
There may however be another problem.
You say that the mill "just before it gets to a good speed starts to rock a bit", and if I am reading you correctly the mill settles down after this.
To me this suggests "harmonic distortion".
All structures, buildings, bridges, towers and wind mills have a harmonic frequency.
Any vibrations that are intune with this frequency add to and magnify the vibration of the stucture and -in the extreme- lead to the collapse of the structure.
But here is the good news.It is easily fixed.
Try adjusting a few things.
If you bring the mill down for checking, raise the 6 metre stays to say 7 metres and maybe put in an extra set of stays at say 4 metres. Also the fixed "bolted" connection to your shed may be a problem. Consider making this connection a little more flexible. Anything that prevents vibrations from accumulating is a good thing.
Engineers plan/design for this all the time.
Hope this helps.
Regards Angus (The older I get , the better I was).