Are you asking whether you will get electricity if you orient the magnets all north on one disk and all south on the other, rather than alternating them?
The answer is yes, you will, but the voltage will be much lower and it will still be AC.
The voltage generated depends upon the rate of change of magnetic flux through the coils.
Consider the normal case where the flux starts out (a) north-to-south, then becomes (b) south-to-north, then goes back to (a) north-to-south, etc. Let's arbitrarily all changing from (a) to (b) "decreasing" and (b) to (a) "increasing". Let's further say that when flux is decreasing you get a negative voltage across a coil, and increasing gives a positive voltage. Obviously you have AC because the voltage periodically varies from positive to negative and back.
Now consider the case where all the magnets point the same way, for example, (a) north-to-south. As this pair of magnets moves out of the coil, flux will decrease, though it never becomes zero. Then, as the next (a) north-to-south pair approaches alignment with the coil, flux increases back to the original level. So you still get both a negative and a positive voltage across the coil, because flux went down and then back up again. It doesn't matter that it never reached, or went beyond, the zero point.
What does matter is that the change was now smaller, in the same amount of time, so all you have done is made an alternator with a lower output voltage. It is still going to be AC.