Reuben, while you don't say what for one assumes you mean "the whole system"
So heres my opnion, I would choose 48v If I was starting over, why......
Basically less amps everywhere, which means less I sq R losses.
Smaller diamiter cables = cost saving.
48V inverters will have a larger surge capability.
So lets look at this, if you have enough sola panels they don't care if they are wired for 24 or 48V.
If you are making a say duel rotor, you just wind the coils to suit.
Batteries well they are batteries and you buy and connect them to suit. Take a rating of say 1500 a/h, now it's 1500 a/h every which way and probally not much if any difference in price.
The down side there may be less equipment to choose from for 48v systems than 24, but if you intend to buy quality I don't believe thats a problem.
Generally the higher voltage is at the top end of the current market and most of the junk ops sorry budget equipment is in 12 and 24V range.
Realy depends what you are doing, and as to cable size, well cables for what? or did I miss a post somewhere.
allan down under