d1kta,
It's not clear to me what you are doing. The drawing is a sketch I made of a 16-pole alternator. Typically with a dual-rotor alternator (two magnet rotors and the coils sandwiched in the middle) there is a 4:3 ratio of poles to coils. Other combinations are possible, but this is one of the more common. The sketch has 4 coils in series; 12 total, then there are two magnet rotors, each with 16 magnets.
You said you have 12 magnets. You could do 9 coils, and do a single magnet rotor (with just a steel rotor on the opposite side), or get 12 more magnets. You could also do 6 coils with 8 magnets on each rotor, but you'd need 4 more. With nine coils, you'd have 3 in series; with 8 there would be 2 coils in series.
If you provide the rotor (blades) diameter and details of what you're aiming for, you probably will get a better response and fit for your application.
Good luck, ~ks