What I did too many times while starting out in electronics and learning how to use my Radio Shack cheap multimeter, was that I'd blow the fuse on the ammeter. I wouldn't even realize it until later, while getting frustrated about something not seeming to work. If that hasn't happened to you, then the other thing you could be seeing it the maximum value allowed on that scale - it doesn't print a higher number even if there's much more current to be measured.
One of the reasons cheap digital multimeters (DMM's) often have only 25mA scales and no scales higher is because a lot of microcircuitry can tolerate this current at any voltage without damage and it probably doesn't even hurt you if you pass it through your fingers so everything's safe. The other reason to have this is that there's a class of instrumentation sensor that uses a scale of 0 to 25 mA for its scale of signals into the measurement terminal, making any DMM capable of troubleshooting these instruments. Pressure sensors and stuff like that.
What you're doing is probably different from what's done with those sensors, so you'll have to be careful with your 25mA ammeter test circuit on the DMM when you use it. Your alternator can probably push a few amps when spun up to a decent speed, which would be many times higher than your DMM can tolerate.
With 3-phase outputs from your alternator, you can hook up some resistors across the 3 pairs of leads (in a triangle) and then:
1) see that it works
2) feel that the resistors get hot but not too hot
3) measure voltage across the leads of a resistor
4) Lastly, connect the ammeter in series with a resistor to measure the current that way.
Done in that order, you will be able to safely approach a set of resistors that demonstrate how much power your PMA can produce, and not melt anything while you do it.
I would suggest starting with a trio of 100 ohm resistors, as fat as you can get them. After you measure what that does, you can make some judgments about what happens when you swap those for smaller values, eg 25 ohms, and so on.